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Bioinformatics: from Algorithms to Applications 2018
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Monday
, July 16
Main Hall, Saint Petersburg State University
09:00 •
Registration
09:45 •
Opening Ceremony
09:55 •
Remarks
10:00 •
Tools to Link Human and Environmental Microbiomes for Health
11:00 •
Break
11:20 •
Exploring the microbiome of primates using cell-free DNA
11:40 •
Soil microbiome as a keystone factor of soil genesis - the insight from the large scale study of heterogeneous soil chronosequences.
12:00 •
QIIMP: Microbiome metadata made easy
12:20 •
New algorithms and tools for large-scale sequence analysis of metagenomics data
12:40 •
Lunch
14:00 •
Culture-free generation of highly contiguous microbial genomes from human and marine microbiomes
15:00 •
Assembling a (diploid/polyploid) genome to perfection: the case of the bdelloid rotifer Adineta vaga
15:20 •
Main results from the 3,000 rice genomes sequences
15:40 •
Protein storage in plant seeds is associated with the amyloid formation
16:00 •
Search for new amyloidogenic proteins: bioinformatic predictions and verification in the yeast-based assays
16:20 •
Poster Section
16:20 •
Break
Tuesday
, July 17
Main Hall, Saint Petersburg State University
09:00 •
Towards perfect de novo DNA assembly
10:00 •
Bwise: a novel accurate, haplotype-specific genome assembler
10:20 •
Break
10:40 •
Assembling barcoded RNA sequencing data
11:00 •
BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From Assembly Graphs
11:20 •
Plasmid detection and assembly in genomic and metagenomic datasets
11:40 •
CellPi: unsupervised processing pipeline of mouse and human single-cell RNA-seq data
12:00 •
Lunch
13:20 •
Test tubes, sequencing machines, computers: bioinformatics as a molecular biology tool
14:20 •
HEDGE: Highly accurate GPU-powered protein-protein docking pipeline
15:00 •
CRISPR: fascinating biology and limitless applications
16:00 •
Break
16:20 •
Promoters and enhancers landscape of embryonic development and hibernation in chicken
16:40 •
Genome rearrangements in bacteria
17:00 •
Analysis and visualization of segmental duplications in mammalian genomes
Pier
18:00 •
Dinner
Wednesday
, July 18
Main Hall, Saint Petersburg State University
09:00 •
Sequencing genome diversity in fish
10:00 •
The Genome Russia Project – 2018
10:40 •
Break
11:00 •
A Rapid Exact Solution for the Guided Genome Aliquoting Problem
11:20 •
Bounded-length Smith-Waterman alignment
11:40 •
Reconstruction of a Set of Points from the Noise Multiset of Pairwise Distances in n^2 Steps for the Cyclic Sequencing Problem
12:00 •
Bayesian modelling of gene network alterations during tree-like processes: evolution or cells differentiation
12:20 •
Lunch
13:30 •
Discovering novel metabolisms via metagenomics
14:30 •
ClinCNV: novel method for large-scale CNV and CNA discovery
14:50 •
Mathematical modeling of SNP %GC in microbial core genomes
15:10 •
Break
15:30 •
Building time- and cost-effective bioinformatics pipelines in the Cloud - from bcl to visual analysis with New Genome Browser
16:10 •
Closing Remarks
Thursday
, July 19
Auditorium 410, Graduate School of Management
09:30 •
QIIME Workshop
LIMITED
11:00 •
Break
11:30 •
QIIME Workshop
LIMITED
13:00 •
Lunch
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Bioinformatics: from Algorithms to Applications 2018
Europe/Moscow
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Bioinformatics: from Algorithms to Applications 2018
Jul 16
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19, 2018
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, July 18
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, July 19
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Saint Petersburg, Russia
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Main Hall, Saint Petersburg State University
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, July 18
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, July 19
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Main Hall, Saint Petersburg State University
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